- Click on Genomes to the left to load a genome.
- Drag the the vertical scroll bar to zoom through various levels of genetic data.
- Drag the the horizontal scroll bar to move along a sequence.
- Type an orf id an press return/enter to search for an orf.
- Click on the orf whose orthologs you wish to view.
- Now press the "Load Orthologous Button near the bottom of the screen.
- Click on every orf that you want to align.
- Make sure they show up on the list of loaded orfs to the right.
- When every orf that you wish to align is on the ors loaded list click the align button.
- Wait until the message says "Alignment Loaded" (about ten seconds).
- Now you may view the alignment
- Use the vertical scroll bar to zoom into the amino acid and DNA levels.
- Navigate to the orf level using the vertical scroll bar.
- Click on the upper right corner where it says "Enter a pdb id."
- Enter a pdb id such as 1dxx. Press return. The protein will load/
General Navigation:
To View Orthologous Orfs:
To Make an Alignment:
To Load Proteins from the Protein Data Bank:
Design: Samwell Freeman
This work was made possible by a generous grant from the
National Institute of Health |
Fraser-Liggett, C.M. (Unviersity of Maryland) |
Mongodin, E.F. (University of Maryland) |
Casjens, S.R. (University of Utah Medical Center) |
Dunn, J. (Brookhaven National Labs) |
Luft, B.J. (Stony Brook University) |
Qiu, W.G. (Hunter College of the City University of New York) |
Schutzer, S.E. (New Jersey Medical School)